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Sample GSM1505138 Query DataSets for GSM1505138
Status Public on Sep 17, 2014
Title Muscle_121
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 31
bmi: 37.649
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943028_R06C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.785672743
cg00001583 0.092350117
cg00002028 0.064414954
cg00002719 0.146268016
cg00002837 0.326969858
cg00003202 0.035457163
cg00003287 0.370458036
cg00007036 0.913843179
cg00007898 0.063566214
cg00008004 0.133757823
cg00008647 0.054680709
cg00009292 0.148585775
cg00011717 0.830111327
cg00014168 0.634157469
cg00015286 0.812800204
cg00016238 0.863280466
cg00017221 0.112153599
cg00017437 0.116324226
cg00021123 0.704253834
cg00021576 0.108755622

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505138_5822943028_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505138_5822943028_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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