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Sample GSM1505137 Query DataSets for GSM1505137
Status Public on Sep 17, 2014
Title Muscle_110
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 41
bmi: 34.809
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943028_R05C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.809994674
cg00001583 0.073403269
cg00002028 0.064279381
cg00002719 0.258825801
cg00002837 0.337981941
cg00003202 0.041038242
cg00003287 0.313419531
cg00007036 0.951592735
cg00007898 0.045592909
cg00008004 0.182926734
cg00008647 0.075855754
cg00009292 0.126330592
cg00011717 0.86925026
cg00014168 0.665599777
cg00015286 0.746310518
cg00016238 0.716167125
cg00017221 0.110094268
cg00017437 0.070884271
cg00021123 0.761510164
cg00021576 0.090838279

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505137_5822943028_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505137_5822943028_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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