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Sample GSM1505136 Query DataSets for GSM1505136
Status Public on Sep 17, 2014
Title Muscle_102
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 41
bmi: 50.365
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943028_R03C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.767822599
cg00001583 0.077536902
cg00002028 0.069797747
cg00002719 0.113869123
cg00002837 0.283132701
cg00003202 0.052840597
cg00003287 0.371383577
cg00007036 0.924340385
cg00007898 0.059510523
cg00008004 0.127468935
cg00008647 0.072934002
cg00009292 0.133384958
cg00011717 0.891859503
cg00014168 0.588934169
cg00015286 0.749479313
cg00016238 0.747925969
cg00017221 0.08830612
cg00017437 0.065049348
cg00021123 0.650266752
cg00021576 0.069723737

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505136_5822943028_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505136_5822943028_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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