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Sample GSM1505135 Query DataSets for GSM1505135
Status Public on Sep 17, 2014
Title Muscle_73
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 42
bmi: 50.058
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943028_R01C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.794584
cg00001583 0.066863195
cg00002028 0.088886711
cg00002719 0.208354994
cg00002837 0.368188032
cg00003202 0.028530457
cg00003287 0.389953302
cg00007036 0.930326516
cg00007898 0.060255719
cg00008004 0.146169906
cg00008647 0.069694224
cg00009292 0.125355554
cg00011717 0.876022496
cg00014168 0.66037416
cg00015286 0.72533646
cg00016238 0.783538565
cg00017221 0.072307387
cg00017437 0.069022625
cg00021123 0.689896481
cg00021576 0.098415088

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505135_5822943028_R01C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505135_5822943028_R01C02_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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