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Sample GSM1505134 Query DataSets for GSM1505134
Status Public on Sep 17, 2014
Title Muscle_99
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 49
bmi: 44.607
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943026_R06C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.800993903
cg00001583 0.073285787
cg00002028 0.060483113
cg00002719 0.500475196
cg00002837 0.443141143
cg00003202 0.031163647
cg00003287 0.490161841
cg00007036 0.932679171
cg00007898 0.04297447
cg00008004 0.145730545
cg00008647 0.073082853
cg00009292 0.124911123
cg00011717 0.861216393
cg00014168 0.595658022
cg00015286 0.772919669
cg00016238 0.829275794
cg00017221 0.082422366
cg00017437 0.049852599
cg00021123 0.674569505
cg00021576 0.076660628

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505134_5822943026_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505134_5822943026_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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