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Sample GSM1505133 Query DataSets for GSM1505133
Status Public on Sep 17, 2014
Title Muscle_56
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 44
bmi: 54.199
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943026_R05C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.858562096
cg00001583 0.065619865
cg00002028 0.056525608
cg00002719 0.363545616
cg00002837 0.389392241
cg00003202 0.032313082
cg00003287 0.393303958
cg00007036 0.949811918
cg00007898 0.073404061
cg00008004 0.188254012
cg00008647 0.060463915
cg00009292 0.149035693
cg00011717 0.859372643
cg00014168 0.68991486
cg00015286 0.74584337
cg00016238 0.862087332
cg00017221 0.124283992
cg00017437 0.051395732
cg00021123 0.714485273
cg00021576 0.066251971

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505133_5822943026_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505133_5822943026_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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