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Sample GSM1505132 Query DataSets for GSM1505132
Status Public on Sep 17, 2014
Title Muscle_116
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 53
bmi: 45.085
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943026_R03C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.763180073
cg00001583 0.09170715
cg00002028 0.061907937
cg00002719 0.209045728
cg00002837 0.348207456
cg00003202 0.032140048
cg00003287 0.335153263
cg00007036 0.946382034
cg00007898 0.048948788
cg00008004 0.113870355
cg00008647 0.066878583
cg00009292 0.122525926
cg00011717 0.912984438
cg00014168 0.593369752
cg00015286 0.771666825
cg00016238 0.81122749
cg00017221 0.083525508
cg00017437 0.062103996
cg00021123 0.727848022
cg00021576 0.067968281

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505132_5822943026_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505132_5822943026_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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