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Sample GSM1505131 Query DataSets for GSM1505131
Status Public on Sep 17, 2014
Title Muscle_124
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 42
bmi: 71.121
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943026_R02C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.650637697
cg00001583 0.079610714
cg00002028 0.060382703
cg00002719 0.268962118
cg00002837 0.404801584
cg00003202 0.030244751
cg00003287 0.510605351
cg00007036 0.954343035
cg00007898 0.060541263
cg00008004 0.105827062
cg00008647 0.061350637
cg00009292 0.132344458
cg00011717 0.867717139
cg00014168 0.623957484
cg00015286 0.776801624
cg00016238 0.869118945
cg00017221 0.078139762
cg00017437 0.082614179
cg00021123 0.704510498
cg00021576 0.078265078

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505131_5822943026_R02C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505131_5822943026_R02C01_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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