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Sample GSM1505130 Query DataSets for GSM1505130
Status Public on Sep 17, 2014
Title Muscle_105
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 34
bmi: 59.259
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943019_R01C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.789338636
cg00001583 0.080169757
cg00002028 0.083785846
cg00002719 0.348515585
cg00002837 0.266698553
cg00003202 0.040066442
cg00003287 0.349464604
cg00007036 0.913273168
cg00007898 0.046097216
cg00008004 0.210562913
cg00008647 0.075889258
cg00009292 0.114568014
cg00011717 0.882825204
cg00014168 0.686423248
cg00015286 0.762196387
cg00016238 0.735885374
cg00017221 0.120514011
cg00017437 0.062941912
cg00021123 0.738800792
cg00021576 0.092010028

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505130_5822943019_R01C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505130_5822943019_R01C02_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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