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Sample GSM1505129 Query DataSets for GSM1505129
Status Public on Sep 17, 2014
Title Muscle_130
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 32
bmi: 49.535
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943019_R01C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.766148844
cg00001583 0.080604808
cg00002028 0.083995369
cg00002719 0.397178498
cg00002837 0.539029322
cg00003202 0.031243072
cg00003287 0.40738194
cg00007036 0.896525197
cg00007898 0.047684638
cg00008004 0.159043793
cg00008647 0.071761584
cg00009292 0.108325589
cg00011717 0.86494498
cg00014168 0.638768153
cg00015286 0.763752725
cg00016238 0.723226839
cg00017221 0.09680553
cg00017437 0.045733054
cg00021123 0.626791149
cg00021576 0.082629437

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505129_5822943019_R01C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505129_5822943019_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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