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Sample GSM1505128 Query DataSets for GSM1505128
Status Public on Sep 17, 2014
Title Muscle_74
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 37
bmi: 53.508
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943015_R01C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.687819158
cg00001583 0.136495295
cg00002028 0.064359308
cg00002719 0.21333843
cg00002837 0.408165006
cg00003202 0.037508184
cg00003287 0.388544559
cg00007036 0.937997731
cg00007898 0.055042577
cg00008004 0.214200329
cg00008647 0.084730352
cg00009292 0.115580583
cg00011717 0.865336854
cg00014168 0.660831275
cg00015286 0.765510292
cg00016238 0.842527926
cg00017221 0.075624607
cg00017437 0.074410988
cg00021123 0.647666702
cg00021576 0.068302897

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505128_5822943015_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505128_5822943015_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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