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Sample GSM1505127 Query DataSets for GSM1505127
Status Public on Sep 17, 2014
Title Muscle_93
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 37
bmi: 47.331
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943015_R01C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.667929231
cg00001583 0.082051195
cg00002028 0.071292822
cg00002719 0.153428777
cg00002837 0.402229303
cg00003202 0.044454464
cg00003287 0.394669506
cg00007036 0.953673167
cg00007898 0.046616145
cg00008004 0.138404364
cg00008647 0.062018727
cg00009292 0.119990262
cg00011717 0.880729681
cg00014168 0.665974179
cg00015286 0.712613783
cg00016238 0.684311648
cg00017221 0.087563917
cg00017437 0.061024127
cg00021123 0.728588277
cg00021576 0.057606872

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505127_5822943015_R01C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505127_5822943015_R01C01_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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