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Sample GSM1505126 Query DataSets for GSM1505126
Status Public on Sep 17, 2014
Title Muscle_111
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 35
bmi: 38.062
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943014_R05C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.906408882
cg00001583 0.086876257
cg00002028 0.068228465
cg00002719 0.278620826
cg00002837 0.56220409
cg00003202 0.031742082
cg00003287 0.277006259
cg00007036 0.947565935
cg00007898 0.0498239
cg00008004 0.177247954
cg00008647 0.071615721
cg00009292 0.12429742
cg00011717 0.861073772
cg00014168 0.636126931
cg00015286 0.67019517
cg00016238 0.75959328
cg00017221 0.134617548
cg00017437 0.03381993
cg00021123 0.710683636
cg00021576 0.080081791

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505126_5822943014_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505126_5822943014_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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