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Sample GSM1505125 Query DataSets for GSM1505125
Status Public on Sep 17, 2014
Title Muscle_97
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 54
bmi: 43.183
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943014_R03C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.607692476
cg00001583 0.09346266
cg00002028 0.062851834
cg00002719 0.099688579
cg00002837 0.359074051
cg00003202 0.051699411
cg00003287 0.291900376
cg00007036 0.932792701
cg00007898 0.059311708
cg00008004 0.125146111
cg00008647 0.144489131
cg00009292 0.158546591
cg00011717 0.876701261
cg00014168 0.587647528
cg00015286 0.812262721
cg00016238 0.871376692
cg00017221 0.116134466
cg00017437 0.083618024
cg00021123 0.688171066
cg00021576 0.098481239

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505125_5822943014_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505125_5822943014_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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