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Sample GSM1505124 Query DataSets for GSM1505124
Status Public on Sep 17, 2014
Title Muscle_66
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 29
bmi: 42.659
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943013_R01C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.733317483
cg00001583 0.070241429
cg00002028 0.073393102
cg00002719 0.205227803
cg00002837 0.362454685
cg00003202 0.034770356
cg00003287 0.385176783
cg00007036 0.933922466
cg00007898 0.062417134
cg00008004 0.115375581
cg00008647 0.081162819
cg00009292 0.146965354
cg00011717 0.857029311
cg00014168 0.586261859
cg00015286 0.729893553
cg00016238 0.882885014
cg00017221 0.096003012
cg00017437 0.06960905
cg00021123 0.689476101
cg00021576 0.071194729

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505124_5822943013_R01C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505124_5822943013_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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