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Sample GSM1505123 Query DataSets for GSM1505123
Status Public on Sep 17, 2014
Title Muscle_63
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 54
bmi: 40.462
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822943002_R06C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.843764106
cg00001583 0.084918072
cg00002028 0.05751687
cg00002719 0.232239796
cg00002837 0.389720489
cg00003202 0.029241874
cg00003287 0.31445594
cg00007036 0.939062898
cg00007898 0.064101313
cg00008004 0.187170186
cg00008647 0.108487599
cg00009292 0.150409709
cg00011717 0.880856304
cg00014168 0.543816637
cg00015286 0.72551587
cg00016238 0.781439112
cg00017221 0.088552045
cg00017437 0.066810967
cg00021123 0.690358325
cg00021576 0.093694265

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505123_5822943002_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505123_5822943002_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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