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Sample GSM1505122 Query DataSets for GSM1505122
Status Public on Sep 17, 2014
Title Muscle_113
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 45
bmi: 37.532
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791030_R06C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.901298393
cg00001583 0.114490668
cg00002028 0.067630958
cg00002719 0.10382711
cg00002837 0.413616128
cg00003202 0.018684757
cg00003287 0.422074395
cg00007036 0.961209125
cg00007898 0.049228703
cg00008004 0.181836526
cg00008647 0.072694809
cg00009292 0.183813369
cg00011717 0.901192924
cg00014168 0.729252348
cg00015286 0.779576614
cg00016238 0.716449561
cg00017221 0.131665663
cg00017437 0.075259783
cg00021123 0.680073825
cg00021576 0.045857466

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505122_5822791030_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505122_5822791030_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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