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Sample GSM1505121 Query DataSets for GSM1505121
Status Public on Sep 17, 2014
Title Muscle_40
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 67
bmi: 49.931
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791030_R05C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.718138754
cg00001583 0.066915706
cg00002028 0.065118984
cg00002719 0.149653339
cg00002837 0.296310872
cg00003202 0.026971125
cg00003287 0.487941709
cg00007036 0.945988235
cg00007898 0.056802035
cg00008004 0.089749997
cg00008647 0.07630311
cg00009292 0.193952532
cg00011717 0.931719305
cg00014168 0.758710973
cg00015286 0.853782831
cg00016238 0.879317685
cg00017221 0.093107921
cg00017437 0.141698506
cg00021123 0.614243269
cg00021576 0.069509768

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505121_5822791030_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505121_5822791030_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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