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Sample GSM1505120 Query DataSets for GSM1505120
Status Public on Sep 17, 2014
Title Muscle_103
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 28
bmi: 68.679
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791030_R03C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.851379378
cg00001583 0.050766088
cg00002028 0.066832567
cg00002719 0.088498337
cg00002837 0.300632468
cg00003202 0.023467985
cg00003287 0.32913359
cg00007036 0.935629406
cg00007898 0.074970573
cg00008004 0.147844127
cg00008647 0.078639136
cg00009292 0.148161024
cg00011717 0.924385531
cg00014168 0.704178942
cg00015286 0.809359312
cg00016238 0.732615543
cg00017221 0.07327441
cg00017437 0.048877685
cg00021123 0.609269723
cg00021576 0.053323884

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505120_5822791030_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505120_5822791030_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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