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Sample GSM1505119 Query DataSets for GSM1505119
Status Public on Sep 17, 2014
Title Muscle_123
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 42
bmi: 40.081
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791030_R02C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.873104519
cg00001583 0.095686482
cg00002028 0.075944685
cg00002719 0.139578897
cg00002837 0.418792156
cg00003202 0.022063964
cg00003287 0.408560572
cg00007036 0.956892597
cg00007898 0.062401157
cg00008004 0.14044459
cg00008647 0.069866433
cg00009292 0.161572862
cg00011717 0.907972543
cg00014168 0.703441967
cg00015286 0.846176883
cg00016238 0.702539836
cg00017221 0.113767048
cg00017437 0.100745747
cg00021123 0.638549697
cg00021576 0.059926393

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505119_5822791030_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505119_5822791030_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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