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Sample GSM1505118 Query DataSets for GSM1505118
Status Public on Sep 17, 2014
Title Muscle_114
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 49
bmi: 36.332
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791029_R06C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.855544009
cg00001583 0.059100698
cg00002028 0.069547644
cg00002719 0.158140945
cg00002837 0.355962767
cg00003202 0.019616482
cg00003287 0.419602482
cg00007036 0.960370136
cg00007898 0.089903939
cg00008004 0.196098263
cg00008647 0.078120646
cg00009292 0.154689763
cg00011717 0.906137395
cg00014168 0.761147425
cg00015286 0.739254528
cg00016238 0.888450359
cg00017221 0.078866009
cg00017437 0.06279103
cg00021123 0.63590378
cg00021576 0.106415759

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505118_5822791029_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505118_5822791029_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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