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Sample GSM1505117 Query DataSets for GSM1505117
Status Public on Sep 17, 2014
Title Muscle_42
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 45
bmi: 50.538
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791029_R05C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.826733808
cg00001583 0.088906115
cg00002028 0.052702043
cg00002719 0.1348114
cg00002837 0.319895209
cg00003202 0.04067262
cg00003287 0.277950872
cg00007036 0.933260321
cg00007898 0.046981905
cg00008004 0.182731468
cg00008647 0.123227278
cg00009292 0.168527467
cg00011717 0.927396322
cg00014168 0.643579532
cg00015286 0.694253343
cg00016238 0.867447329
cg00017221 0.075479913
cg00017437 0.082602642
cg00021123 0.663090129
cg00021576 0.053319525

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505117_5822791029_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505117_5822791029_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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