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Sample GSM1505115 Query DataSets for GSM1505115
Status Public on Sep 17, 2014
Title Muscle_89
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 31
bmi: 44.205
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791029_R03C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.810053082
cg00001583 0.085899287
cg00002028 0.058855156
cg00002719 0.143917312
cg00002837 0.295052876
cg00003202 0.032107606
cg00003287 0.376714104
cg00007036 0.937399659
cg00007898 0.073624929
cg00008004 0.124805655
cg00008647 0.074300926
cg00009292 0.16279843
cg00011717 0.864481838
cg00014168 0.623118405
cg00015286 0.776852473
cg00016238 0.875902789
cg00017221 0.082202152
cg00017437 0.071239686
cg00021123 0.594979121
cg00021576 0.082307881

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505115_5822791029_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505115_5822791029_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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