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Sample GSM1505113 Query DataSets for GSM1505113
Status Public on Sep 17, 2014
Title Muscle_127
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 40
bmi: 41.660
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791029_R01C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.835895571
cg00001583 0.088644659
cg00002028 0.069000237
cg00002719 0.083455177
cg00002837 0.320716074
cg00003202 0.044634354
cg00003287 0.351393287
cg00007036 0.93964509
cg00007898 0.060386865
cg00008004 0.19587242
cg00008647 0.093322058
cg00009292 0.149669051
cg00011717 0.896854514
cg00014168 0.615084417
cg00015286 0.747613657
cg00016238 0.798478474
cg00017221 0.07891456
cg00017437 0.07337008
cg00021123 0.637078632
cg00021576 0.072531591

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505113_5822791029_R01C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505113_5822791029_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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