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Sample GSM1505112 Query DataSets for GSM1505112
Status Public on Sep 17, 2014
Title Muscle_90
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 26
bmi: 34.743
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791028_R02C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.739064983
cg00001583 0.068992939
cg00002028 0.063171498
cg00002719 0.082506222
cg00002837 0.284676375
cg00003202 0.02305915
cg00003287 0.373649131
cg00007036 0.927407765
cg00007898 0.053559698
cg00008004 0.09828829
cg00008647 0.087101738
cg00009292 0.159807693
cg00011717 0.878120954
cg00014168 0.542646631
cg00015286 0.725238549
cg00016238 0.848518521
cg00017221 0.08848962
cg00017437 0.071923378
cg00021123 0.521432737
cg00021576 0.062445154

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505112_5822791028_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505112_5822791028_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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