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Sample GSM1505111 Query DataSets for GSM1505111
Status Public on Sep 17, 2014
Title Muscle_109
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 50
bmi: 46.680
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791026_R05C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.823901971
cg00001583 0.125535225
cg00002028 0.072078581
cg00002719 0.229328658
cg00002837 0.427566407
cg00003202 0.040058237
cg00003287 0.4880561
cg00007036 0.948469583
cg00007898 0.06256782
cg00008004 0.1352802
cg00008647 0.057317961
cg00009292 0.140443074
cg00011717 0.85645132
cg00014168 0.564806735
cg00015286 0.792152118
cg00016238 0.687909353
cg00017221 0.075973409
cg00017437 0.045874566
cg00021123 0.665518432
cg00021576 0.167105886

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505111_5822791026_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505111_5822791026_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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