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Sample GSM1505110 Query DataSets for GSM1505110
Status Public on Sep 17, 2014
Title Muscle_131
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 54
bmi: 41.402
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791026_R04C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.713893823
cg00001583 0.094981246
cg00002028 0.053740622
cg00002719 0.172903688
cg00002837 0.333811324
cg00003202 0.027840545
cg00003287 0.334160494
cg00007036 0.950212432
cg00007898 0.052827006
cg00008004 0.133769976
cg00008647 0.137824458
cg00009292 0.12226725
cg00011717 0.880395726
cg00014168 0.628859591
cg00015286 0.746842978
cg00016238 0.852885559
cg00017221 0.101355007
cg00017437 0.085023079
cg00021123 0.726802421
cg00021576 0.118299892

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505110_5822791026_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505110_5822791026_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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