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Sample GSM1505109 Query DataSets for GSM1505109
Status Public on Sep 17, 2014
Title Muscle_84
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 40
bmi: 48.231
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791024_R04C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.636677576
cg00001583 0.073688962
cg00002028 0.07358512
cg00002719 0.12399841
cg00002837 0.345495485
cg00003202 0.029313624
cg00003287 0.259593405
cg00007036 0.929457122
cg00007898 0.036812452
cg00008004 0.112552534
cg00008647 0.06624297
cg00009292 0.133352917
cg00011717 0.91095927
cg00014168 0.587410519
cg00015286 0.638996054
cg00016238 0.804458091
cg00017221 0.07224608
cg00017437 0.056051154
cg00021123 0.627671442
cg00021576 0.103033682

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505109_5822791024_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505109_5822791024_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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