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Sample GSM1505108 Query DataSets for GSM1505108
Status Public on Sep 17, 2014
Title Muscle_78
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 52
bmi: 38.617
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791024_R03C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.784844336
cg00001583 0.093153649
cg00002028 0.075529068
cg00002719 0.151815592
cg00002837 0.342887283
cg00003202 0.034295199
cg00003287 0.409562601
cg00007036 0.945702355
cg00007898 0.053505641
cg00008004 0.103120274
cg00008647 0.087309586
cg00009292 0.136981972
cg00011717 0.846751841
cg00014168 0.648749628
cg00015286 0.743454834
cg00016238 0.76623632
cg00017221 0.083800771
cg00017437 0.058707395
cg00021123 0.673200228
cg00021576 0.078191281

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505108_5822791024_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505108_5822791024_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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