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Sample GSM1505107 Query DataSets for GSM1505107
Status Public on Sep 17, 2014
Title Muscle_68
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 49
bmi: 38.372
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791024_R01C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.664903404
cg00001583 0.087416584
cg00002028 0.081827436
cg00002719 0.0853545
cg00002837 0.329035205
cg00003202 0.023486058
cg00003287 0.285437713
cg00007036 0.919283441
cg00007898 0.062739331
cg00008004 0.151757071
cg00008647 0.094597077
cg00009292 0.158446862
cg00011717 0.833759518
cg00014168 0.64257038
cg00015286 0.792323241
cg00016238 0.874802998
cg00017221 0.108669743
cg00017437 0.069731035
cg00021123 0.661144576
cg00021576 0.112560858

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505107_5822791024_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505107_5822791024_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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