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Sample GSM1505106 Query DataSets for GSM1505106
Status Public on Sep 17, 2014
Title Muscle_87
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 37
bmi: 40.816
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791024_R01C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.743940186
cg00001583 0.122079126
cg00002028 0.08270765
cg00002719 0.109593566
cg00002837 0.411075114
cg00003202 0.057182043
cg00003287 0.310695088
cg00007036 0.942554415
cg00007898 0.047189388
cg00008004 0.101205129
cg00008647 0.130884322
cg00009292 0.108326412
cg00011717 0.904840176
cg00014168 0.647212133
cg00015286 0.796211511
cg00016238 0.815886633
cg00017221 0.07402409
cg00017437 0.131665663
cg00021123 0.650936622
cg00021576 0.067557377

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505106_5822791024_R01C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505106_5822791024_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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