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Sample GSM1505105 Query DataSets for GSM1505105
Status Public on Sep 17, 2014
Title Muscle_112
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 47
bmi: 35.907
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791019_R02C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.704132613
cg00001583 0.100737438
cg00002028 0.059121011
cg00002719 0.16770982
cg00002837 0.350195662
cg00003202 0.038850377
cg00003287 0.324221188
cg00007036 0.926407714
cg00007898 0.041180603
cg00008004 0.09520477
cg00008647 0.07182068
cg00009292 0.127730204
cg00011717 0.820597218
cg00014168 0.582956076
cg00015286 0.768792615
cg00016238 0.829511005
cg00017221 0.139349153
cg00017437 0.072205058
cg00021123 0.645073719
cg00021576 0.10256895

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505105_5822791019_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505105_5822791019_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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