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Sample GSM1505104 Query DataSets for GSM1505104
Status Public on Sep 17, 2014
Title Muscle_107
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 62
bmi: 40.645
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791018_R02C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.695822479
cg00001583 0.084263452
cg00002028 0.088582288
cg00002719 0.157204406
cg00002837 0.351425702
cg00003202 0.041420576
cg00003287 0.37159807
cg00007036 0.950015763
cg00007898 0.051519814
cg00008004 0.087351948
cg00008647 0.117594959
cg00009292 0.148116168
cg00011717 0.838024637
cg00014168 0.561672393
cg00015286 0.743691369
cg00016238 0.785047389
cg00017221 0.085003777
cg00017437 0.084425319
cg00021123 0.549044626
cg00021576 0.073003203

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505104_5822791018_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505104_5822791018_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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