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Sample GSM1505103 Query DataSets for GSM1505103
Status Public on Sep 17, 2014
Title Muscle_119
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 35
bmi: 30.694
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791015_R04C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.786470015
cg00001583 0.073026504
cg00002028 0.048136313
cg00002719 0.159386584
cg00002837 0.355529895
cg00003202 0.033235297
cg00003287 0.398036925
cg00007036 0.935157063
cg00007898 0.069809705
cg00008004 0.11760503
cg00008647 0.080676892
cg00009292 0.121452338
cg00011717 0.843142924
cg00014168 0.529926857
cg00015286 0.738032829
cg00016238 0.883542965
cg00017221 0.075808313
cg00017437 0.050482701
cg00021123 0.619215063
cg00021576 0.076210735

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505103_5822791015_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505103_5822791015_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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