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Sample GSM1505102 Query DataSets for GSM1505102
Status Public on Sep 17, 2014
Title Muscle_117
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 51
bmi: 52.392
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791015_R03C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.68971629
cg00001583 0.073550438
cg00002028 0.073671039
cg00002719 0.123116269
cg00002837 0.29417843
cg00003202 0.025526761
cg00003287 0.442557904
cg00007036 0.924588773
cg00007898 0.044050844
cg00008004 0.134851803
cg00008647 0.091490976
cg00009292 0.149434848
cg00011717 0.84642161
cg00014168 0.599363374
cg00015286 0.724935086
cg00016238 0.843990371
cg00017221 0.068304379
cg00017437 0.051647275
cg00021123 0.648506989
cg00021576 0.080174182

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505102_5822791015_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505102_5822791015_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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