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Sample GSM1505101 Query DataSets for GSM1505101
Status Public on Sep 17, 2014
Title Muscle_69
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 38
bmi: 53.487
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791015_R02C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.733641413
cg00001583 0.07522103
cg00002028 0.066537262
cg00002719 0.144011621
cg00002837 0.351874595
cg00003202 0.04939652
cg00003287 0.416172556
cg00007036 0.931130094
cg00007898 0.040598078
cg00008004 0.086818369
cg00008647 0.065548732
cg00009292 0.130231458
cg00011717 0.85869141
cg00014168 0.632145366
cg00015286 0.798589105
cg00016238 0.791277828
cg00017221 0.077334154
cg00017437 0.063103598
cg00021123 0.677412612
cg00021576 0.066756451

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505101_5822791015_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505101_5822791015_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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