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Sample GSM1505100 Query DataSets for GSM1505100
Status Public on Sep 17, 2014
Title Muscle_36
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 65
bmi: 46.283
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791015_R02C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.785726759
cg00001583 0.088102509
cg00002028 0.063200956
cg00002719 0.171247191
cg00002837 0.406507211
cg00003202 0.050521381
cg00003287 0.488140712
cg00007036 0.893110789
cg00007898 0.042047429
cg00008004 0.131354909
cg00008647 0.067099328
cg00009292 0.150129649
cg00011717 0.84706698
cg00014168 0.624072875
cg00015286 0.774884564
cg00016238 0.779862271
cg00017221 0.078022678
cg00017437 0.052673493
cg00021123 0.723287782
cg00021576 0.044212324

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505100_5822791015_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505100_5822791015_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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