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Sample GSM1505098 Query DataSets for GSM1505098
Status Public on Sep 17, 2014
Title Muscle_120
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 39
bmi: 39.520
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791013_R02C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.682352179
cg00001583 0.080262744
cg00002028 0.052203774
cg00002719 0.174412965
cg00002837 0.338796498
cg00003202 0.028175031
cg00003287 0.314883864
cg00007036 0.933014638
cg00007898 0.077345187
cg00008004 0.176829968
cg00008647 0.103053097
cg00009292 0.134347861
cg00011717 0.865002192
cg00014168 0.624487805
cg00015286 0.757593363
cg00016238 0.73457249
cg00017221 0.082364546
cg00017437 0.076490945
cg00021123 0.544009438
cg00021576 0.065936986

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505098_5822791013_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505098_5822791013_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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