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Sample GSM1505097 Query DataSets for GSM1505097
Status Public on Sep 17, 2014
Title Muscle_60
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 45
bmi: 38.100
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791013_R01C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.765596565
cg00001583 0.08001258
cg00002028 0.074155942
cg00002719 0.144624397
cg00002837 0.333981816
cg00003202 0.033222448
cg00003287 0.3963172
cg00007036 0.934204954
cg00007898 0.042077611
cg00008004 0.18083216
cg00008647 0.086888406
cg00009292 0.13978401
cg00011717 0.832287685
cg00014168 0.622801378
cg00015286 0.782921681
cg00016238 0.857412975
cg00017221 0.118437933
cg00017437 0.059396315
cg00021123 0.624058692
cg00021576 0.101286941

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505097_5822791013_R01C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505097_5822791013_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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