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Sample GSM1505096 Query DataSets for GSM1505096
Status Public on Sep 17, 2014
Title Muscle_55
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 47
bmi: 63.362
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791011_R02C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.610718524
cg00001583 0.107429931
cg00002028 0.067132947
cg00002719 0.169305086
cg00002837 0.394916066
cg00003202 0.03095522
cg00003287 0.328099896
cg00007036 0.924610858
cg00007898 0.067205681
cg00008004 0.149487754
cg00008647 0.114810364
cg00009292 0.123549092
cg00011717 0.902674127
cg00014168 0.593717278
cg00015286 0.69799753
cg00016238 0.819142244
cg00017221 0.100115676
cg00017437 0.084105958
cg00021123 0.633911604
cg00021576 0.111519766

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505096_5822791011_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505096_5822791011_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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