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Sample GSM1505095 Query DataSets for GSM1505095
Status Public on Sep 17, 2014
Title Muscle_51
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 59
bmi: 46.475
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791011_R01C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.641296004
cg00001583 0.083271894
cg00002028 0.08957659
cg00002719 0.102210916
cg00002837 0.305634067
cg00003202 0.026381531
cg00003287 0.231468634
cg00007036 0.949879881
cg00007898 0.0574197
cg00008004 0.150295477
cg00008647 0.097415777
cg00009292 0.146472347
cg00011717 0.891192571
cg00014168 0.605403184
cg00015286 0.639489248
cg00016238 0.867318816
cg00017221 0.079935189
cg00017437 0.125373507
cg00021123 0.679056445
cg00021576 0.07715327

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505095_5822791011_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505095_5822791011_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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