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Sample GSM1505093 Query DataSets for GSM1505093
Status Public on Sep 17, 2014
Title Muscle_37
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 38
bmi: 45.089
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791008_R05C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.700539984
cg00001583 0.123971236
cg00002028 0.068692643
cg00002719 0.190867703
cg00002837 0.38418295
cg00003202 0.028941461
cg00003287 0.409366125
cg00007036 0.903048502
cg00007898 0.039607347
cg00008004 0.2089902
cg00008647 0.091643009
cg00009292 0.141527195
cg00011717 0.837459157
cg00014168 0.676637454
cg00015286 0.76975864
cg00016238 0.8591151
cg00017221 0.10824523
cg00017437 0.057449282
cg00021123 0.652091874
cg00021576 0.076778827

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505093_5822791008_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505093_5822791008_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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