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Sample GSM1505092 Query DataSets for GSM1505092
Status Public on Sep 17, 2014
Title Muscle_88
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 49
bmi: 57.443
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791008_R04C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.760619407
cg00001583 0.128009224
cg00002028 0.069236294
cg00002719 0.1994848
cg00002837 0.431455802
cg00003202 0.044189861
cg00003287 0.300961419
cg00007036 0.903022302
cg00007898 0.039780126
cg00008004 0.131733897
cg00008647 0.071235571
cg00009292 0.09629696
cg00011717 0.887897649
cg00014168 0.710848782
cg00015286 0.791265502
cg00016238 0.657798597
cg00017221 0.082754988
cg00017437 0.047993461
cg00021123 0.799352569
cg00021576 0.080885888

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505092_5822791008_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505092_5822791008_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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