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Sample GSM1505091 Query DataSets for GSM1505091
Status Public on Sep 17, 2014
Title Muscle_83
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 36
bmi: 44.067
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791003_R05C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.695635866
cg00001583 0.090421915
cg00002028 0.066430436
cg00002719 0.116605977
cg00002837 0.351314155
cg00003202 0.026198947
cg00003287 0.29723767
cg00007036 0.919821738
cg00007898 0.039558107
cg00008004 0.100892305
cg00008647 0.083657873
cg00009292 0.14554456
cg00011717 0.839545538
cg00014168 0.589137641
cg00015286 0.731367286
cg00016238 0.723582662
cg00017221 0.058931754
cg00017437 0.106830966
cg00021123 0.579206674
cg00021576 0.080565297

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505091_5822791003_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505091_5822791003_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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