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Sample GSM1505090 Query DataSets for GSM1505090
Status Public on Sep 17, 2014
Title Muscle_85
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 65
bmi: 55.432
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791003_R02C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.753038183
cg00001583 0.090359282
cg00002028 0.080044166
cg00002719 0.230568026
cg00002837 0.398889338
cg00003202 0.032257946
cg00003287 0.427814492
cg00007036 0.940742197
cg00007898 0.058614839
cg00008004 0.190376541
cg00008647 0.079119257
cg00009292 0.144741884
cg00011717 0.846548499
cg00014168 0.606081533
cg00015286 0.800277864
cg00016238 0.905994016
cg00017221 0.09243452
cg00017437 0.051213026
cg00021123 0.563601296
cg00021576 0.081461225

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505090_5822791003_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505090_5822791003_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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