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Sample GSM1505089 Query DataSets for GSM1505089
Status Public on Sep 17, 2014
Title Muscle_54
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 49
bmi: 73.617
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791003_R01C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.779701739
cg00001583 0.101389602
cg00002028 0.071466368
cg00002719 0.17169257
cg00002837 0.415031834
cg00003202 0.031436008
cg00003287 0.446256932
cg00007036 0.913505697
cg00007898 0.032879799
cg00008004 0.118388271
cg00008647 0.08971961
cg00009292 0.149299848
cg00011717 0.872458068
cg00014168 0.621274579
cg00015286 0.821022804
cg00016238 0.749859179
cg00017221 0.080206836
cg00017437 0.08732927
cg00021123 0.649029324
cg00021576 0.091099969

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505089_5822791003_R01C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505089_5822791003_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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