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Sample GSM1505088 Query DataSets for GSM1505088
Status Public on Sep 17, 2014
Title Muscle_43
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 41
bmi: 43.284
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791002_R03C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.758057335
cg00001583 0.075955725
cg00002028 0.070613022
cg00002719 0.212677078
cg00002837 0.429331121
cg00003202 0.039936937
cg00003287 0.343241552
cg00007036 0.928021401
cg00007898 0.029021324
cg00008004 0.202459416
cg00008647 0.072706186
cg00009292 0.122743873
cg00011717 0.851680752
cg00014168 0.661434202
cg00015286 0.70408602
cg00016238 0.75771437
cg00017221 0.087723892
cg00017437 0.066750422
cg00021123 0.699303294
cg00021576 0.104559323

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505088_5822791002_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505088_5822791002_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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