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Sample GSM1505085 Query DataSets for GSM1505085
Status Public on Sep 17, 2014
Title Muscle_92
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 39
bmi: 45.764
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791001_R05C01
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.761092709
cg00001583 0.083793276
cg00002028 0.049892197
cg00002719 0.286309824
cg00002837 0.371464233
cg00003202 0.024317425
cg00003287 0.25974504
cg00007036 0.933702831
cg00007898 0.034620957
cg00008004 0.115375581
cg00008647 0.077603069
cg00009292 0.113223105
cg00011717 0.879369215
cg00014168 0.671665945
cg00015286 0.81464927
cg00016238 0.770798438
cg00017221 0.085499629
cg00017437 0.062164424
cg00021123 0.700542489
cg00021576 0.056929891

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505085_5822791001_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505085_5822791001_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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