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Sample GSM1505084 Query DataSets for GSM1505084
Status Public on Sep 17, 2014
Title Muscle_91
Sample type genomic
Source name severely obese patient_muscle
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 38
bmi: 53.560
tissue: muscle
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description 5822791001_R04C02
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61452 Epigenome analysis of the human muscle
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.83061502
cg00001583 0.061463517
cg00002028 0.060740476
cg00002719 0.263186951
cg00002837 0.357266074
cg00003202 0.031056408
cg00003287 0.329601259
cg00007036 0.941858607
cg00007898 0.055790211
cg00008004 0.157014236
cg00008647 0.168354978
cg00009292 0.126765239
cg00011717 0.833456668
cg00014168 0.619176167
cg00015286 0.749283197
cg00016238 0.744384094
cg00017221 0.117115187
cg00017437 0.056512513
cg00021123 0.685367792
cg00021576 0.058679307

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505084_5822791001_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505084_5822791001_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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