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Sample GSM1505083 Query DataSets for GSM1505083
Status Public on Sep 17, 2014
Title SAT_90
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 26
bmi: 34.74285714
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.736078438
cg00001583 0.062532479
cg00002028 0.081079986
cg00002719 0.131145489
cg00002837 0.307048093
cg00003202 0.033394444
cg00003287 0.221171214
cg00007036 0.902469336
cg00007898 0.060780815
cg00008004 0.153730691
cg00008647 0.09241058
cg00009292 0.142221329
cg00011717 0.903120657
cg00014168 0.600053333
cg00015286 0.719180702
cg00016238 0.870757478
cg00017221 0.070037051
cg00017437 0.066245389
cg00021123 0.595585333
cg00021576 0.070890749

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505083_5822943029_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505083_5822943029_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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